PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510665.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 620aa    MW: 69076.5 Da    PI: 6.4649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.1e-13462508455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  XP_004510665.1 462 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 508
                     799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-5453247IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047458507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17461521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-15461511No hitNo description
Gene3DG3DSA:4.10.280.102.3E-17462521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10462508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-16464513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKIEVGLGVG GLWNEEEKAM VVEVLGVNAL NYLISNSVSN ENLLMAIGSG ENLQNKLSDL  60
VERPNVLNFS WNYAIFWQIS QSKFGDWVLG WGDGCCREPK EQEQEKQEED LRMKGVYVED  120
EKKQRMRKRV LQKLHTTFGG SDEDNYAFGL DRVTDTEMFF LASMYFSFPR GHGGPGKSFA  180
TGKHLWLIDA LKSDYDDDDY CVRSFLAKSA GFKTIVLVPT DLGVVELGSV RNVCESFELL  240
QTVKSVFSSQ SSFPRVKSIS LSMDDEKRDE NAPFSCLAVG ESIKTNVNNV NHNHHLNNHS  300
RVEGVGVPKI FGQELNSATA TPSREKLAVR KMEERPWGGH PNGNGVSFPN GVNGSSWRAS  360
QVVRQHAPVD VFAPRMSPST SNAPEVGNDV RHEFVLNNYQ QQRQAQMQID FSGATSRPSV  420
RSIVGESELS DIDREEKPSP SDERRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA  480
LRAVVPNISK MDKASLLGDA IAYINELQAK LVTMESERAQ FGSTSRDGSS SVLQANPRAP  540
DVDIQAAQDG VIVKVSCAID AHPISKLIQT FKDAEISIVE SKLNTASDTV FHTFIIKSQG  600
SEQLTKEKLI AAFSRESNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-22512487193Transcription factor MYC3
4rqw_B9e-22512487193Transcription factor MYC3
4rs9_A9e-22512487193Transcription factor MYC3
4yz6_A9e-22512487193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1443451RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510665.10.0PREDICTED: transcription factor bHLH13-like
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A072TP530.0A0A072TP53_MEDTR; ABA-inducible bHLH-type transcription factor
STRINGGLYMA07G06090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-171bHLH family protein